pedviz.haplotype
Class MerlinErrorChecking

java.lang.Object
  pedviz.haplotype.MerlinErrorChecking

public class MerlinErrorChecking
extends java.lang.Object

It's possible to process a Merlin error output file to highlight errors in the haplotype/genotype data.

Author:

Luki

Constructor Summary

MerlinErrorChecking(java.lang.String filename)
Loads the given Merlin-Error file.

MerlinErrorChecking(java.lang.String filename, boolean resource)
Loads the given Merlin-Error file.

Method Summary

java.util.HashMap<java.lang.Object,MerlinError>

getErrors() Returns a collection of all errors.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MerlinErrorChecking

public MerlinErrorChecking(java.lang.String filename)

Loads the given Merlin-Error file.

Parameters:

filename - Merlin-Error file

MerlinErrorChecking

public MerlinErrorChecking(java.lang.String filename,
                           boolean resource)

Loads the given Merlin-Error file.

Parameters:

filename - Merlin-Error file

resource - Loads the file from a resource (jar,..).

Method Detail

getErrors

public java.util.HashMap<java.lang.Object,MerlinError> getErrors()

Returns a collection of all errors.

Returns:

a collection of all errors.