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Rpedviz (Alpha Version)
System requirements
Java VM 5.0/1.5 or higher Get Java
(To check Java version, type "java -version")
For 2.5D Visualization: Java 3D v1.4.2 or higher and up-to-date graphic card drivers.
The R project (>= 2.0.0)
rJava
and
pedviz_0.15.zip (2d + 2.5d + Rpedviz) of for *NIX
pedviz_0.1.tgz (2d + 2.5d + Rpedviz)
Step by step guide
- Fullfill system requirements
- 2d visualization
library(rJava)
# update classpath
.jinit(classpath="c:/pedviz_0.1.jar")
pedviz <- .jnew("pedviz/rpedviz/RPedviz2D")
.jcall(pedviz, "V", "addQualitativeTrait", "qtrait", 0, 1, 0.5, 0)
# update data-path
pedigree <- as.vector(readLines("c:/tutorial_data_2.csv"))
format <- pedigree[1]
data <- .jarray(pedigree[2:length(pedigree)])
hints <- .jarray(c("qtrait"))
.jcall(pedviz, "V", "plot", format, data, hints)
Download rpedviz_2d.r (please adjust the class- and file-path).
Download tutorial_data_2.csv
- 2.5d visualization (pre-alpha)
library(rJava)
# update classpath; pedviz 3d + java 3d jar's have to be included
.jinit(classpath="c:/pedviz_j3d_0.1.jar;C:/j3dcore.jar;C:/j3dutils.jar;C:/vecmath.jar;")
pedviz <- .jnew("pedviz/rpedviz/RPedviz3D")
.jcall(pedviz, "V", "addQualitativeTrait", "qtrait", 0, 1, 0.5, 0)
pedigree <- as.vector(readLines("c:/tutorial_data_2.csv"))
format <- pedigree[1]
data <- .jarray(pedigree[2:length(pedigree)])
hints <- .jarray(c("qtrait"))
.jcall(pedviz, "V", "plot", format, data, hints)
Download rpedviz_3d.r (please adjust the class- and file-path).
Download tutorial_data_2.csv
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